PROTEOMICS · 2009 · 263 citations · 13 references
Life SciencesBiochemistryVisualizationCarbohydrate BiochemistryCarbohydrate ChemistryGlycobiologyCarbohydrate StructureGlycan StructureMonosaccharide StructureN-linked GlycosylationO-linked GlycosylationPolysaccharide StructureCarbohydrate CrystallographyGlycan Structural AnalysisGlycan TopologyGlycosidic Linkage AnalysisGlycosidic Linkage GeometryGlycosidic LinkagesHand DrawingPolysaccharide Structure Elucidation
Symbolic diagrams are commonly used to depict N- and O-linked glycans but there is no general consensus as to how individual constituent monosaccharides or linkages are shown. This article proposes a system that avoids ambiguities inherent in most other systems and is appropriate for both hand drawing and computer applications. Constituent monosaccharides are depicted by shapes modified to show OAc, deoxy, etc. Linkage is indicated by the bond angle and anomericity by solid (beta) or dashed (alpha) lines.
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GlycoBase and autoGU: tools for HPLC-based glycan analysis
Matthew P. Campbell, Louise Royle, Catherine M. Radcliffe et al. · Bioinformatics · 2008 · 290 citations · Full text