Journal of Computational Chemistry · 1999 · 144 citations · 38 references
Natural SciencesBiophysicsPhysicsComputational ChemistryMembrane BiophysicsMolecular BiophysicsForce FieldsLipid Bilayer StructureLipid BilayersLipid StructureMolecular DynamicsMolecular SimulationAll-atom Force FieldsAtom-field InteractionsLipid Bilayer DynamicsLipid Bilayer SimulationsLipid-water InteractionsMembrane SimulationsMolecular Dynamics Of Lipid MembranesOrder Parameters
We refined the united atom field for the simulations of phospholipid membranes. To validate this potential we performed 1000-ps constant pressure simulation of a dipalmitoylphosphatidicholine (DPPC) bilayer at T=50° C. The average area per head group (61.6±0.6) Å2 obtained in our simulation agrees well with the measured one of (62.9±1.3) Å2. The calculated SCD order parameters for the Sn-2 hydrocarbon tail also display a good agreement with the experiment. The conformations of head groups in our simulations of the liquid crystal phase are different than the ones observed in the crystal structure. ©1999 John Wiley & Sons, Inc. J Comput Chem 20, 531–545, 1999
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A smooth particle mesh Ewald method
Ulrich Essmann, L. Perera, Max L. Berkowitz et al. · The Journal of Chemical Physics · 1995 · 22.9K citations
William L. Jorgensen, Julian Tirado‐Rives · Journal of the American Chemical Society · 1988 · 5K citations