JAIDS Journal of Acquired Immune Deficiency Syndromes · 2004 · 56 citations · 37 references
Veterinary MedicineInfectious DiseasesMicrobiologyEpidemiologyMolecular EpidemiologyVirologyHiv EpidemiologyHiv SurveillanceMolecular TypingSexual HealthSexually Transmitted Infection EpidemiologySexually Transmitted InfectionsDemographic CharacterizationGenetic Transmission PatternsHeteroduplex FormationHiv PrevalenceHiv Transmission DynamicsLogistic Regression AnalysisRelative Risk EstimationViral Strain Typing
The molecular diversity and demographic characteristics among 976 anti-HIV-1-positive heterosexuals attending 15 sexually transmitted infection (STI) clinics participating in an unlinked anonymous HIV prevalence serosurvey in England and Wales during 1997-2000 were investigated. Subtypes were assigned by heteroduplex mobility assay or sequencing of the p17/p24 region of gag and the V3/V4 region of env and by sequencing of the protease gene. Overall, there was no significant change in the subtype distribution, with subtype C accounting for the majority (32%) of subtyped infections. Subtypes B (29%), A (12%), circulating recombinant forms (CRFs, 9%), unique recombinant forms (URFs, 8%), and subtypes D-H (8%) were also detected. Thirty-nine percent of infections in men were with subtype B, whereas subtype C was most common (38%) in women. Logistic regression analyses showed the relative risk (RR) of infection with a non-B subtype, compared with subtype B, to be greater in African-born individuals (RR = 28.9, P < 0.01), among newly diagnosed infections (RR = 3.4, P < 0.01), and in women (RR = 2.4, P < 0.01). These findings indicate a high level of genetic diversity among HIV-infected heterosexual STI clinic attendees in England and Wales. Recently, subtype C has become most prevalent, particularly in younger age groups, suggesting recent acquisition of this viral strain. The high proportion of non-B, CRF, and URF infections among UK-born individuals is consistent with mixing between migrants and UK-born individuals in England and Wales. As migration patterns change, continued monitoring of HIV genetic diversity will aid understanding of transmission patterns.
37
MODELTEST: testing the model of DNA substitution.
David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations
Rapid and simple method for purification of nucleic acids
René Boom, C. J. A. Sol, M M Salimans et al. · Journal of Clinical Microbiology · 1990 · 5.3K citations · Full text
Kavita S. Lole, Robert C. Bollinger, Ramesh Paranjape et al. · Journal of Virology · 1999 · 2.8K citations · Full text
Sexual behaviour in Britain: partnerships, practices, and HIV risk behaviours
Catherine H Mercer, Bob Erens, Andrew Copas et al. · The Lancet · 2001 · 834 citations