Nature · 2014 · 742 citations · 41 references
Life SciencesMolecular BiologyMolecular GeneticsCardiovascular GeneticsGene ExpressionTranscriptionCardiovascular DiseaseCardiovascular GenomicsCardiovascular Molecular PhysiologyMicrorna-mediated RegulationNoncoding Rna BiologyNoncoding Rna FunctionLong Noncoding Rna RegulationNoncoding Rna Regulation
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
Mitchell Guttman, Ido Amit, Manuel Garber et al. · Nature · 2009 · 4.2K citations · Full text