Langmuir · 1997 · 190 citations · 28 references
Natural SciencesBiochemistryBiophysicsMembrane BiophysicsMolecular BiophysicsStructural BiophysicsBiological MembranesLipid Bilayer StructureLipid BilayersLipid StructureMembrane ModelingMembrane ProteinsComputer Simulation FrameworksLipid Bilayer SimulationsMembrane SimulationsMolecular Dynamics Of Lipid MembranesOrder Parameter AnalysisPartial Molar VolumePhase Behavior Of Lipid BilayersPhospholipid Bilayers
A series of molecular dynamics computer simulations have been carried out on fully hydrated liquid crystalline dipalmitoyl phosphatidylcholine (DPPC) bilayers at constant surface areas corresponding to 59.3, 62.9, 65.5, or 68.1 Å 2 /lipid, the range of values suggested by different experiments in different laboratories. Simulated quantities are compared with those from NMR (deuterium order parameters and contribution of molecular tilt to the order parameter), X-ray scattering ( D -spacings and detailed density profiles), and partial molar volumes. The results strongly support the value of 62.9 Å 2 /DPPC recently proposed by Nagle et al. ( Biophys. J. 1996, 70, 1419) and demonstrate the feasibility of a combined experimental, and simulation-based approach for determining membrane structure.
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Constant pressure molecular dynamics simulation: The Langevin piston method
Scott E. Feller, Yuhong Zhang, Richard W. Pastor et al. · The Journal of Chemical Physics · 1995 · 4.5K citations
Natural Sciences, Chemistry, Physics +17
D. Peter Tieleman, Herman J. C. Berendsen · The Journal of Chemical Physics · 1996 · 505 citations · Full text