Spatial and Spatio-temporal Epidemiology · 2014 · 151 citations · 66 references
Veterinary MedicineLand-use PlanningEpidemiologyRisk AssessmentRisk Factor AnalysisDisease MappingDisease Risk AssessmentLand UseSpatial Risk AssessmentVector EcologyBoosted TreesDisease Risk MappingLand Use Effects On Vector DistributionLand Use Regression ModelingRegression TreesRisk Prediction MapsSpatial Epidemiology ModelingVector-borne Disease Risk Mapping
The transmission of dengue disease is influenced by complex interactions among vector, host and virus. Land use such as water bodies or certain agricultural practices have been identified as likely risk factors for dengue because of the provision of suitable habitats for the vector. Many studies have focused on the land use factors of dengue vector abundance in small areas but have not yet studied the relationship between land use factors and dengue cases for large regions. This study aims to clarify if land use factors other than human settlements, e.g. different types of agricultural land use, water bodies and forest are associated with reported dengue cases from 2008 to 2010 in the state of Selangor, Malaysia. From the correlative relationship, we aim to generate a prediction risk map. We used Boosted Regression Trees (BRT) to account for nonlinearities and interactions between the factors with high predictive accuracies. Our model with a cross-validated performance score (Area Under the Receiver Operator Characteristic Curve, ROC AUC) of 0.81 showed that the most important land use factors are human settlements (model importance of 39.2%), followed by water bodies (16.1%), mixed horticulture (8.7%), open land (7.5%) and neglected grassland (6.7%). A risk map after 100 model runs with a cross-validated ROC AUC mean of 0.81 (±0.001 s.d.) is presented. Our findings may be an important asset for improving surveillance and control interventions for dengue.
66
R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
Greedy function approximation: A gradient boosting machine.
Jerome H. Friedman · The Annals of Statistics · 2001 · 29K citations · Full text
The global distribution and burden of dengue
Samir Bhatt, Peter W. Gething, Oliver J. Brady et al. · Nature · 2013 · 10.2K citations · Full text
Public Health, Infectious Disease Control, Infectious Diseases +12
Jerome H. Friedman · Computational Statistics & Data Analysis · 2002 · 7.1K citations