Science · 2014 · 541 citations · 54 references
Life SciencesMarine BiologyMicrobiologyMarine EcologyMarine MicrobiologyMicrobial EcologyAquatic Microbial EcologyMarine BacteriologyMarine Microbial MetabolismMarine Microbial PhysiologyMicrobial OceanographyOpen Ocean MicrobiologyExtracellular VesiclesHeterotrophic MetabolismLipid VesiclesMarine Bacterial EcologyMarine Bacterial PhysiologyMarine Microbial LipidsPhotosynthetic Microbial CommunitiesVesicle Membranes
Heterotrophic bacteria release extracellular vesicles that mediate long‑range interactions, but vesicle production by photoautotrophs and their ecological prevalence remain uncharacterized. We show that Prochlorococcus produces lipid vesicles containing proteins, DNA, and RNA, that DNA‑laden vesicles are common in seawater, and that these vesicles can feed heterotrophic bacteria, highlighting their role in marine carbon and information flux.
Many heterotrophic bacteria are known to release extracellular vesicles, facilitating interactions between cells and their environment from a distance. Vesicle production has not been described in photoautotrophs, however, and the prevalence and characteristics of vesicles in natural ecosystems is unknown. Here, we report that cultures of Prochlorococcus, a numerically dominant marine cyanobacterium, continuously release lipid vesicles containing proteins, DNA, and RNA. We also show that vesicles carrying DNA from diverse bacteria are abundant in coastal and open-ocean seawater samples. Prochlorococcus vesicles can support the growth of heterotrophic bacterial cultures, which implicates these structures in marine carbon flux. The ability of vesicles to deliver diverse compounds in discrete packages adds another layer of complexity to the flow of information, energy, and biomolecules in marine microbial communities.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Pedro Flombaum, José L. Gallegos, Rodolfo A. Gordillo et al. · Proceedings of the National Academy of Sciences · 2013 · 1.4K citations · Full text
Life Sciences, Biology, Oceanography +15