Chemical Research in Toxicology · 2009 · 32 citations · 34 references
Life SciencesBiochemistryBiologyBiophysical ChemistryComputational ChemistryStructural BiologyBinding ThermodynamicsElectrostatics In BiomoleculesLigand BindingProtein Complex AnalysisProtein StructureCoordinationElectrostatic Interactions In Protein ComplexesEquilibriumMacromolecular Complex FormationProtein-ligand Binding ThermodynamicsReactivityReceptorsTransferrin Uptake
Ab initio quantum mechanical computational studies for the structure and IR spectra of the uranyl complex with human serum apotransferrin (TF) protein are carried out to model uranyl intake into the human cell through endocytosis and formation of a coordination complex with the protein binding sites. The computed IR spectra and structure of the uranyl-protein complex facilitate interpretation of the observed spectra and confirm the primary binding sites of the transferrin protein with the uranyl ion. Our computed equilibrium geometry and the IR spectra of the uranyl-TF complex reveal that uranyl ion is bound to two tyrosines, one aspartate group, and one carbonate ion. Our IR spectra indicate that histidine is not involved in binding to uranyl with transferrin protein. Our computations reveal a short, strong hydrogen bond, which could play an important role in the stabilization and formation of the uranyl-TF complex. Computed Laplacian charge plots indicate high chemical reactivity on this complex as both an electrophile and a nucleophile, facilitating binding to different receptors and thus entry into a number of target organs and the blood-brain barrier. The Mulliken charge density plots and the three-dimensional charge density plots suggest a donor-acceptor mechanism in the complex formation.
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Density-functional thermochemistry. III. The role of exact exchange
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