PLoS Genetics · 2009 · 246 citations · 90 references
Life SciencesMicrobiologyMolecular BiologyGene ExpressionSignal TransductionTranscriptional RegulationMicrobial Stress Response SystemsSignal Transduction PathwaysStress ResponsesStress Signaling PathwaysStress-induced Gene ExpressionTranscriptional Regulation In ProkaryotesBacterial Cell Envelope DamageCell Envelope Stress ResponseCellular Stress Signaling PathwaysEscherichia ColiGlobal Transcriptional RegulationStress Response RegulatorsStress SignalingTranscriptional Response To Stress
The Bae, Cpx, Psp, Rcs, and sigma(E) pathways constitute the Escherichia coli signaling systems that detect and respond to alterations of the bacterial envelope. Contributions of these systems to stress response have previously been examined individually; however, the possible interconnections between these pathways are unknown. Here we investigate the dynamics between the five stress response pathways by determining the specificities of each system with respect to signal-inducing conditions, and monitoring global transcriptional changes in response to transient overexpression of each of the effectors. Our studies show that different extracytoplasmic stress conditions elicit a combined response of these pathways. Involvement of the five pathways in the various tested stress conditions is explained by our unexpected finding that transcriptional responses induced by the individual systems show little overlap. The extracytoplasmic stress signaling pathways in E. coli thus regulate mainly complementary functions whose discrete contributions are integrated to mount the full adaptive response.
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A User's Guide to Principal Components
Stefan D. Leigh, J. Edward Jackson · Technometrics · 1993 · 3.4K citations
Normalization of cDNA microarray data
Gordon K. Smyth · Methods · 2003 · 1.9K citations