Concepedia

Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera)

Yong Yang, Zhuocheng Hou, Yuan-Huai Qian, Han Seok Kang, Qingtao Zeng

Molecular Phylogenetics and Evolution · 2011 · 56 citations · 39 references

DOI

Concepts

References

39

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text

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MrBayes 3: Bayesian phylogenetic inference under mixed models

Fredrik Ronquist, John P. Huelsenbeck · Bioinformatics · 2003 · 29.4K citations · Full text

, , +17

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

Koichiro Tamura, Joel T. Dudley, M Nei et al. · Molecular Biology and Evolution · 2007 · 28.8K citations · Full text

, , +17

MODELTEST: testing the model of DNA substitution.

David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations

, , +13

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.9K citations · Full text

, , +17