The Journal of Physical Chemistry A · 2004 · 112 citations · 28 references
Natural SciencesChemistryPhysicsComputational ChemistryQuantum ChemistryTheoretical ChemistryAb Initio MethodsBinding ThermodynamicsIntermolecular ForcesMolecular Orbital TheoryProtein DimerizationProtein StructureAb Initio CalculationsAmino AcidsBinding Energy DecompositionBonding In Aromatic SystemsComplete Basis Set ExtrapolationMolecular Modeling Of Amino Acid ConformationsPotential Energy Curvesπ Interactions
The interaction between aromatic rings and sulfur atoms in the side chains of amino acids is a factor in the formation and stabilization of alpha-helices in proteins. We studied the H(2)S-benzene dimer as the simplest possible prototype of sulfur-pi interactions. High-quality potential energy curves were obtained using coupled-cluster theory with single, double, and perturbative triple substitutions (CCSD(T)) and a large, augmented quadruple-zeta basis set (aug-cc-pVQZ). The equilibrium intermonomer distance for the hydrogens-down C(2)(v) configuration is 3.8 A with an interaction energy of -2.74 kcal mol(-1). Extrapolating the binding energy to the complete basis set limit gives -2.81 kcal mol(-1). This binding energy is comparable to that of H(2)O-benzene or of the benzene dimer, and the equilibrium distance is in close agreement with experiment. Other orientations of the dimer were also considered at less complete levels of theory. A considerable reduction in binding for the sulfur-down configuration, together with an energy decomposition analysis, indicates that the attraction in H(2)S-benzene is best thought of as arising from a favorable electrostatic interaction between partially positive hydrogens in H(2)S with the negatively charged pi-cloud of the benzene.
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