PLANT PHYSIOLOGY · 2006 · 253 citations · 49 references
Life SciencesPlant BiologyPlant SciencesPlant Molecular BiologyPlant-microbe InteractionsTranscriptomicsLegume CropsNitrogen FixationPlant Transcriptional RegulationPlant TranscriptomicsSymbiotic Nitrogen FixationLeaf Senescence RegulationLegume SymbiosisMaster Regulatory GenesNitrogen-fixing NodulesSenescenceSenescence PhysiologySymbiotic Nitrogen Fixing NodulesSymbiotic Nodulation
Rhizobia reside as symbiosomes in the infected cells of legume nodules to fix atmospheric nitrogen. The symbiotic relation is strictly controlled, lasts for some time, but eventually leads to nodule senescence. We present a comprehensive transcriptomics study to understand the onset of nodule senescence in the legume Medicago truncatula. Distinct developmental stages with characteristic gene expression were delineated during which the two symbiotic partners were degraded consecutively, marking the switch in nodule tissue status from carbon sink to general nutrient source. Cluster analysis discriminated an early expression group that harbored regulatory genes that might be primary tools to interfere with pod filling-related or stress-induced nodule senescence, ultimately causing prolonged nitrogen fixation. Interestingly, the transcriptomes of nodule and leaf senescence had a high degree of overlap, arguing for the recruitment of similar pathways.
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Systematic determination of genetic network architecture
Saeed Tavazoie, Jason D. Hughes, Michael J. Campbell et al. · Nature Genetics · 1999 · 2.6K citations
GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox
Philip Zimmermann, Matthias Hirsch‐Hoffmann, Lars Hennig et al. · PLANT PHYSIOLOGY · 2004 · 2.5K citations · Full text