The Journal of Chemical Physics · 2003 · 562 citations · 13 references
Natural SciencesChemistryPhysicsChemical KineticsComputational ChemistryPhysical ChemistryChemical Kinetics ModelingMolecular DynamicsMolecular SimulationPhase TransitionsFree Energy BarriersPath SamplingRate Constant DeterminationRate ConstantsTransition Path Sampling
We derive a novel efficient scheme to measure the rate constant of transitions between stable states separated by high free energy barriers in a complex environment within the framework of transition path sampling. The method is based on directly and simultaneously measuring the fluxes through many phase space interfaces and increases the efficiency with at least a factor of 2 with respect to existing transition path sampling rate constant algorithms. The new algorithm is illustrated on the isomerization of a diatomic molecule immersed in a simple fluid.
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Transition path sampling and the calculation of rate constants
Christoph Dellago, Peter G. Bolhuis, Félix S. Csajka et al. · The Journal of Chemical Physics · 1998 · 1.1K citations
on "Understanding molecular simulations"
HR Noori · Max Planck Digital Library · 2013 · 589 citations
Natural Sciences, Chemistry, Physics +12