arXiv (Cornell University) · 2011 · 136 citations · 31 references
Life SciencesBioinformaticsBiostatisticsBiomedical Signal ProcessingComparative GenomicsGenomic Data AnalysisChange DetectionChange-point DetectionComparative Genomic HybridizationDimensionality ReductionSignal ProcessingVariant DetectionArray Comparative Genomic HybridizationArray Genomic HybridizationComparative Genomic Hybridization Data AnalysisFused LassoGroup LassoLassoMultiple Change-point DetectionTotal Variation Minimization
We present the group fused Lasso for detection of multiple change-points shared by a set of co-occurring one-dimensional signals. Change-points are detected by approximating the original signals with a constraint on the multidimensional total variation, leading to piecewise-constant approximations. Fast algorithms are proposed to solve the resulting optimization problems, either exactly or approximately. Conditions are given for consistency of both algorithms as the number of signals increases, and empirical evidence is provided to support the results on simulated and array comparative genomic hybridization data.
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Accurate whole human genome sequencing using reversible terminator chemistry
David Bentley, Shankar Balasubramanian, Harold Swerdlow et al. · Nature · 2008 · 3.8K citations · Full text
Life Sciences, Biology, Genetics +11
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