[22] Using CLUSTAL for multiple sequence alignments

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.4K citations · Full text

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Naruya Saitou, M Nei · Molecular Biology and Evolution · 1987 · 60.2K citations · Full text

Botany, Genetics, Phylogenetic Analysis +19

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

Joseph Felsenstein · Evolution · 1985 · 41K citations · Full text

Biology, Biodiversity, Phylogenetics +13

Confidence Limits on Phylogenies: An Approach Using the Bootstrap

Joseph Felsenstein · Evolution · 1985 · 19.3K citations

Biology, Phylogenetics, Molecular Ecology +5

PHYLIP-Phylogeny inference package (Version 3.2)

Joe Felsenstein · Cladistics · 1989 · 17.9K citations

Biology, Phylogenetics, Molecular Ecology +7