Concepedia

Abstract

Summary: HapAnalyzer is an analysis system that provides minimum analysis methods for the SNP-based association studies. It consists of Hardy-Weinberg equilibrium (HWE) test, linkage disequilibrium (LD) computation, haplotype reconstruction, and SNP (or haplotype)-phenotype association assessment. It is well suited to a case-control association study for the unrelated population. Availability: The HapAnalyzer is freely available from http://www.ngri.re.kr/HapAnalyzer/ Contact: insong@nih.go.kr

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