Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour, +17

Nature Biotechnology

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Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Mitchell Guttman, Manuel Garber, Joshua Z. Levin, +10

Nature Biotechnology

Transcriptional RegulationGeneticsRna BiologyGene StructureMolecular Genetics +7

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

Andrea Pauli, Eivind Valen, Michael Lin, +8

Genome Research

Comparative Functional Genomics of the Fission Yeasts

Zehua Chen, Moran Yassour, Dawn Thompson, +56

Science

GeneticsMolecular GeneticsGenomicsComparative Functional GenomicsGene Structure +15

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth

Christina A. Cuomo, Christopher A. Desjardins, Malina A. Bakowski, +10

Genome Research

The evolution, evolvability and engineering of gene regulatory DNA

Eeshit Dhaval Vaishnav, Carl G. de Boer, Jennifer Molinet, +7

Nature

Gene Regulatory DnaGeneticsGene StructureGenetic EngineeringDna Replication +5

Genome editing reveals dmrt1 as an essential male sex-determining gene in Chinese tongue sole (Cynoglossus semilaevis)

Zhongkai Cui, Yun Liu, Wenwen Wang, +19

Scientific Reports

Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia

Lili Wang, Angela N. Brooks, Jean Fan, +32

Cancer Cell

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Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

Liang Ma, Zehua Chen, Da Wei Huang, +41

Nature Communications

Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia parasitica

Rays H. Y. Jiang, Irene de Bruijn, Brian J. Haas, +38

PLoS Genetics

Class SaprolegniomycetidaeGeneticsSevere PathogensGenomicsParasite Genomics +18