OME-Zarr: a cloud-optimized bioimaging file format with international community support

Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, +66

Histochemistry and Cell Biology

Format Specification ProcessEngineeringData FormatInternational Community SupportHigh Throughput Sequencing +17

Publishing and sharing multi-dimensional image data with OMERO

Jean‐Marie Burel, Sébastien Besson, Colin Blackburn, +15

Mammalian Genome

Bringing Open Data to Whole Slide Imaging

Sébastien Besson, R. A. Leigh, Melissa Linkert, +12

Lecture notes in computer science

Whole Slide ImagingImage AnalysisWhole-slide ImagingMedical ImagingEngineering +9

Metadata management for high content screening in OMERO

Simon Li, Sébastien Besson, Colin Blackburn, +17

Methods

OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale

Josh Moore, Melissa Linkert, Colin Blackburn, +16

Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE

EngineeringMicroscopyBiomedical EngineeringSpatial OmicsBioinformatics Database +19

Use of co-loaded Fluo-3 and Fura Red fluorescent indicators for studying the cytosolic Ca2+concentrations distribution in living plant tissue†

Petr Walczysko, Edgar Wagner, Jolana T. P. Albrechtová

Cell Calcium

Plant PhysiologyCytosolic Ca2+concentrations DistributionCo-loaded Fluo-3BiochemistryEngineering +11

OME-Zarr: a cloud-optimized bioimaging file format with international community support

Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, +66

Format Specification ProcessEngineeringData FormatInternational Community SupportHigh Throughput Sequencing +18

Two-Photon Imaging for Studying the Microbial Ecology of Biofilm Systems

Thomas R. Neu, Petr Walczysko, John R. Lawrence

Microbes and Environments

EngineeringMicroscopyTwo-photon ExcitationBiofilmsTwo-photon Imaging +16

In Situ Activity of Suspended and Immobilized Microbial Communities as Measured by Fluorescence Lifetime Imaging

Petr Walczysko, Ute Kuhlicke, Sabine Knappe, +2

Applied and Environmental Microbiology

Calcium and pH patterning at the apical meristem are specifically altered by photoperiodic flower induction in <i>Chenopodium</i> spp.

Jolana T. P. Albrechtová, S. HEILSCHER, L. LESKE, +2

Plant Cell & Environment

BiologyDevelopmental BiologySignal TransductionBotanyPhotosystems +12