Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

Stephen Gire, Augustine Goba, Kristian G. Andersen, +54

Science

Virus EpidemiologyEbola Virus GenomesEbola Virus OriginWest African VariantViral Evolution +17

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay

Ryan Tewhey, Dylan Kotliar, Daniel Park, +8

Cell

Genetic AnalysisAllelic VariantFunctional GenomicsDirect IdentificationMultiplexed Reporter Assay +11

Clinical Illness and Outcomes in Patients with Ebola in Sierra Leone

John S. Schieffelin, Jeffrey G. Shaffer, Augustine Goba, +43

New England Journal of Medicine

Virus genomes reveal factors that spread and sustained the Ebola epidemic

Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, +92

Nature

Viral EvolutionVirus EpidemiologyPathogenesisViral DynamicEmergent Virus +5

Zika virus evolution and spread in the Americas

Hayden C. Metsky, Christian B. Matranga, Shirlee Wohl, +62

Nature

Zika Virus EvolutionEmergent VirusVirologyVector Borne Disease

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

Nathan D. Grubaugh, Jason T. Ladner, Moritz U. G. Kraemer, +66

Nature

VaccinationVirus EpidemiologyMedicineEmergent VirusVirology +5

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

Daniel J. Park, Gytis Dudas, Shirlee Wohl, +83

Cell

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

Kristian G. Andersen, B. Jesse Shapiro, Christian B. Matranga, +68

Cell

Viral EvolutionPathogenesisVirologyVirus ClassificationVirus Phylogeny +2

Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018

Katherine J. Siddle, Philomena Eromon, Kayla G. Barnes, +47

New England Journal of Medicine

Virus EpidemiologyPathogen DiscoveryInfectious Disease EcologyGenomic AnalysisEmerging Infectious Disease +14

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples

Christian B. Matranga, Kristian G. Andersen, S Winnicki, +24

Genome biology

EngineeringRibosomal RnaViral DiagnosticsEbola Virus GenomesHigh Throughput Sequencing +16